If you have a bash_custom, it will be run at your permissions level (duh

Here are some useful suggestions for customizing your environment.
(Credits to Dave Hale, Malcolm Kesson, Joe Pasquale, and Ken Huff for helping)
1. Make sure you have a bash_custom and you're allowed to execute it, just in case.
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touch /stuhome/bash_custom
chmod 777 /stuhome/bash_custom
2. Next, the first line of your bash_custom should read
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#!/bin/bash
3(maya). By default, Maya saves your preferences to your computer locally, which get deleted when you log off. To save your prefs to your network (stuhome AKA H:\ in windows, like "My Documents") use this:
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if [ -d /stuhome/maya ]
then
rm -rf /home/$USER/maya
ln -s /stuhome/maya /home/$USER/maya
fi
4(houdini). You can do the same for Houdini prefs:
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if [ -d /stuhome/houdni10.0 ]
then
rm -rf /home/$USER/houdini10.0
ln -s /stuhome/houdni10.0 /home/$USER/houdini10.0
fi
***edit, there's a better way to do this, but I forgot off the top of my head.***
5(gnome). To customize your gnome environment, use gconftool-2. I like to have hidden files visible by default:
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gconftool-2 -t boolean -s /desktop/gnome/file_views/show_hidden_files 1
gconftool-2 -t boolean -s /desktop/gnome/file_views/show_backup_files 1
6(cutter). You can also create an alias here. This may not be the best way to do this, but works. To launch Cutter for instance, add
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alias cutter='cd /stuhome/vsfx419/cutter;java -Xmx64m -classpath .:cutter.jar Cutter'
I hope that gives you a start